MAST -- Motif Alignment and Search Tool: Version 3.0
Motif search tool
Data Submission Form
Use this form to submit motifs to
MAST
to be used in searching a sequence database. Your data will NOT be processed at the
San Diego Supercomputer Center
, but on SKCC's "Blazingly Fast and Really Cool Linux Cluster," and the results will be sent to you via e-mail.
Your
e-mail address:
Your
motif
file:
Sequence database
to search:
est (human)
nr
OPTIONS
Scale motif display threshold
by sequence length;
recommended
for
nucleotide
searches
Description
of your motifs:
Use individual sequence composition
in
E
- and
p
-value calculation
Display sequences with
E
-value below:
0.01
0.1
1
10
20
50
100
200
500
1000
Text
output format
Rank
of the first match returned:
1
501
1001
1501
2001
2501
3001
3501
4001
4501
5001
5501
6001
6501
7001
7501
8001
8501
9001
9501
10001
Ignore motifs if
E
-value above:
use all motifs
100
50
20
10
5
2
1
.5
.2
.1
.05
.02
.01
.005
.002
.001
DNA-ONLY OPTIONS
Search nucleotide
database with protein motifs
Treatment of
reverse complement
strands:
combine with given strand
treat as separate sequence
none
Click here for
more information
on
MAST
.
Return to
MEME SYSTEM introduction
.
Please send comments and questions to:
tbailey@sdsc.edu
.